Epigenetics, Vitamin C, and Abnormal Hematopoiesis - Role of Vitamin C in Epigenetic Regulation in Hematopoiesis Sub-Study on CCUS, Low-Risk MDS, and CMML-0/1
Description
Brief Summary
The primary purpose of this multi-centre, randomized, placebo-controlled, double-blind phase
II study is to investigate if oral vitamin C may change the biology of low-risk myeloid
malignancies; i.e., clonal cytopenia of undetermined significance (CCUS), low-risk
myelodysplastic syndromes (MDS), and chronic myelomonocytic leukemia (CMML)-0/1 by reversing
the epigenetic changes characteristic of these disease entities. The epigenetic regulator
TET2 is the gene most often affected in CCUS. Preclinical studies have shown that active
demethylation by the TET enzymes is dependent on vitamin C, and the investigators and
collaborators have shown that plasma vitamin C levels are exceedingly low in hematological
cancer patients but are easily corrected by oral vitamin C. This study is part of an array of
EVITA studies aimed at clarifying whether the standard of care of patients with myeloid
malignancies should be changed and oral vitamin C supplement added to the treatment
recommendations.
Detailed Description
BACKGROUND Recent investigations have shown that mutations in epigenetic regulators are
common, both in the apparently normal hematopoiesis of the elderly and in patients (pts) with
myeloid cancers. It was long anticipated that DNA methylation was a permanent silencing mark,
but with the discovery of the ten eleven translocation (TET) enzymes it became clear that
active demethylation occurs. The initial steps in this process are catalyzed by TET enzymes,
which are, however, frequently mutated and methylated in hematological cancers. The Jumonji
enzymes, which catalyze histone demethylation, are also aberrantly regulated in hematological
cancers.
Vitamin C (VitC) was identified in the 1930'ies as the necessary micronutrient in the
prevention of scurvy. Unlike plants and most animals, humans are unable to synthesize vitC
from glucose due to lack of the required enzyme, L-gulonolactone oxidase. Therefore, vitC
must be provided through the diet. Recent studies recognize vitC as an important cofactor for
the Fe(II)- and 2-oxoglutarate dioxygenase family. These include the TET enzymes, which are
involved in the conversion of 5-methylcytosine (5-mC) to its oxidized derivatives
5-hydroxymethylcytosine (5-hmC), 5-carboxyl cytosine (5-caC), and 5-formylcytosine (5-fC),
and the Jumonji enzymes that are involved in histone demethylation. Accordingly, vitC may
potentially play an important role in the regulation of DNA and histone demethylation.
However, > 80 percentage of hematological cancer pts were found to be severely vitC
deficient. Interestingly, analyses of 20 participants included in the investigators' recently
conducted randomized, placebo-controlled pilot study (NCT02877277) show that the level of
vitC in MDS and CMML pts undergoing treatment with azacitidine, is easily elevated to the
normal range by oral vitC supplement (unpublished data). When pts that were already taking
vitC supplements were switched to placebo, the vitC levels quickly dropped below the normal
range.
It has also been shown that the formation of 5-hmC and its derivatives may be compromised in
healthy individuals and pts with TET mutations. However, since many of these mutations are
heterozygous, and since the three TET enzymes (TET1, TET2, and TET3) may have some
redundancy, restoration of vitC to physiological levels might have an impact on the level of
5-hmC/5-mC in individuals with TET mutant clonal hematopoiesis or hematological cancer.
Analyses of 5-hmC/5-mC levels in peripheral blood (PB) mononuclear cells (MNCs) from the
participants in the pilot study also showed a clear trend toward increased 5-hmC in the vitC
arm, however, after designing the trial the investigators realized that 5-hmC/5-mC levels are
better measured in hematopoietic stem cells in the bone marrow (BM) where the levels are
10-20 fold higher. Thus, the pilot study will be followed-up with a randomized
placebo-controlled trial of oral vitC in individuals with low-risk myeloid malignancies;
i.e., CCUS or low-risk MDS/CMML, to investigate if oral vitC can change the biology of these
disease entities and ultimately prevent progression.
Hypotheses:
1. The investigators and collaborators have previously shown that cancer pts are vitC
deficient, and individuals with CCUS, which represents pre-MDS, might also be vitC
deficient. The hypothesis is that this may lead to reduced levels of 5-hmC/5-mC in vivo
in both cancer pts and individuals with CCUS
2. Elevating serum vitC levels to the normal range in CCUS and low-risk MDS/CMML pts by
oral supplementation with vitC may
- reduce the malignant clone,
- increase the 5-hmC/5-mC ratio,
- change the plasma cytokine profile towards a less inflammatory, less tumorigenic
profile,
- change gene expression
Aims:
To determine if restoring vitC to the normal range in CCUS and low-risk MDS/CMML pts can:
1. reduce the malignant clone,
2. increase the 5-hmC/5-mC ratio in CCUS and low-risk MDS/CMML pts
3. reduce accumulation of 5-mC at promoters/enhancers/long terminal repeats (LTRs), or at
other regulatory genomic regions of tumor suppressors/methylated driver genes/genes
involved in hematopoietic development,
4. upregulate the expression of these genes,
5. change the plasma cytokine profile,
6. alter intestinal permeability (measured by concentration of bacterial DNA in peripheral
blood) and/or composition of gut microbiota,
7. entail any safety risks.
RESEARCH PLAN A total of 100 patients is planned for enrolment. Individuals with CCUS,
low-risk MDS, or CMML-0 or -1 will be included from Rigshospitalet, Herlev University
Hospital, Odense University Hospital, Aalborg University Hospital or Keck Hospital of
University of Southern California between November 2017-December 2021.
The participants will enter block randomization with a ratio of 1:1; vitC 1000 mg/day p.o.
versus placebo for one year.
Up to 30 healthy elderly volunteers are planned for enrolment. Amount and type of bacterial
DNA in PB will be determined and serve as controls.
MATERIAL AND MEASUREMENTS PB: PB samples (45 mL) will be taken at study entry and every 3
months (or more if required according to physician's choice) during the first year.
Measurements include blood counts including differential count, levels of folic acid, vitamin
B12, vitamin D, iron, ferritin, transferrin, transferrin saturation, plasma vitC levels,
cytokines, and bacterial DNA content (referenced to bacterial DNA on patient's skin and in
feces).
BM: BM samples (18 mL) will be taken at study entry, after 3 months, and after one year.
Levels of vitC and various cytokines will be measured. Mutations in genes frequently involved
in myeloid cancer/clonal hematopoiesis, including epigenetic regulators, and variant allele
frequencies (VAF) will be investigated by targeted next generation sequencing in sorted BM
CD34+ cells (if available) or BM negative fraction of CD34+ sorting at study entry, after 3
months and after one year.
RNA sequencing and total 5-hmC/5-mC assessment will be performed on BM CD34+ hematopoietic
stem cells.
Feces: Feces samples (9 mL) will be collected from a subset of patients at study entry, after
3 months, and after one year. Bacterial DNA will be extracted and sequenced.
RESEARCH BIOBANK A research biobank will be established at The Epi-/Genome Laboratory,
Rigshospitalet / Biotech Research and Innovation Centre to store the biological samples from
the participants. The research biobank is approved by the Regional Science Ethics Committee
and the Danish Data Protection Agency in accordance with the Act on Processing of Personal
Data (license no. H-16022249 and 04864/RH-2016-259, respectively). Cryopreserved separated
MNCs from BM and PB will be stored in addition to granulocyte pellets and plasma. The date
for closing the research biobank is 31-12-2030.
For correlative studies, biological samples will be sent to Van Andel Research Institute,
Grand Rapids, US, and Imperial College, London, UK (external collaborators), for RNA
sequencing and analyses of DNA methylation and hydroxymethylation, respectively. Biological
samples will also be sent to Life Science Faculty, University of Copenhagen, and The National
Veterinary Institute, Technical University of Denmark (external collaborators) for
measurement of serum vitC concentrations and analyses of T cell responses, respectively.
METHODS VitC measurement: Ascorbate and total vitC, i.e., ascorbate + dehydroascorbic acid
(the oxidized form of vitC; DHA), are quantified by high-performance liquid chromatography
(HPLC) with coulometric detection; DHA is assessed by subtraction of ascorbate from total
vitC. Uric acid is used as endogenous internal standard.
Cell sorting: Magnetic-activated cell sorting (MACS, using a EasySep device).
Total 5-hmC/5-mC measurement: Dot blot analysis of 5-hmC. 5-hmC/5-mC measurement by Mass
Spectrometry.
Locus specific 5-hmC/5-mC measurement: "EPIC" 850 K BeadChips. 5-hmC/5-mC at selected sites
will be measured by pyrosequencing.
Gene expression: Total RNA sequencing and reverse transcriptase-quantitative polymerase chain
reaction.
Mutation detection: Targeted next generation sequencing of a panel of genes recurrently
mutated in myeloid cancer as described.
STATISTICAL CONSIDERATIONS AND POWER CALCULATION This study is the first study to examine the
effects of vitC as monotherapy on 5-hmC/5-mC levels in hematopoietic stem cells in humans in
vivo. Therefore, it is not possible to perform a power calculation or a sample size
calculation. The number of participants (n=100) is set as an estimate of the number needed to
observe a potential significant difference between the groups (vitC vs. placebo) in the
primary endpoint; median change in VAF of somatic mutations from baseline to 12 months.
Efficacy analyses are by intention-to-treat. Safety analyses include all participants who
receive at least one dose of protocol therapy.
ETHICAL CONSIDERATIONS The study has been approved by the Regional Science Ethics Committee
(H-16022249) and the Danish Data Protection Agency (04864/RH-2016-259).
All participants included in the project will be informed orally and in writing.
Participation will only be accepted after written consent. Participants will be informed that
they can at any time for any reason withdraw from the study without it affecting their
treatment in the health care system.
Using the targeted DNA sequencing approach described, there is a small risk of detecting a
germline mutation in the participants related to myeloid malignancy. The participants will be
asked to state in the informed consent if they do not want to receive any further relevant
health-related information that may appear during the project analyses. Unless the
participant explicitly states that he or she does not want to be informed of any potential
health-related random findings in the study, the participant will be informed and offered
further investigations and genetic counseling at the local hospital in case of random
findings.
Patient disadvantages, side effects, risks, and complications Blood sampling is associated
with brief discomfort and/or pain. No significant risks are associated with the blood
sampling. Local bleeding can occur, which in rare cases can cause discomfort and
discoloration for a few days. Rarely, a blood sampling can cause vasovagal reaction leading
to a brief loss of consciousness.
BM aspiration is associated with brief pain while the local anesthesia is given. Furthermore,
many individuals experience an uncomfortable feeling in the nates and leg while the BM is
aspirated. This lasts approximately 30 seconds. Finally, some tenderness can occur for a few
days after the procedure. Possible complications to undergoing a BM investigation include
bleeding and infection. However, the incidence of these complications is extremely low.
According to the Nordic Nutrition Recommendations there is no evidence that intake of vitC
above 1000 mg/day are either carcinogenic or teratogenic. However, high intakes (> 1000-2000
mg/day) may cause diarrhea and other gastrointestinal disturbances and susceptible
individuals may experience kidney stone formation from increased oxalate formation. Since
vitC is only given at physiological doses, it is anticipated that the study is safe and will
provide no additional risk for the participants; an assumption that is supported by the
experience from the pilot study.
Phase
N/AInclusion and Exclusion Criteria
- Inclusion Criteria: A diagnosis of CCUS:
- Persistent cytopenia for > 6 months defined as hgb < 11.3 g/dL (7 mmol/L) in women and hgb < 12.9 g/dL (8 mmol/L) in men, thrombocyte count < 150 x 10^9/L or neutrophil count < 1.8 x 10^9/L
- Normal cytogenetics (with the exception of deletion of the Y chromosome which can be accepted)
- A bone marrow morphology that is not diagnostic of MDS or any other malignancy
- Other common causes of cytopenia (vitamin or other deficiencies, virus infection, etc.) have been ruled out
- Hematolytic conditions have been ruled out
- The presence of a detectable mutation in genes recurrently affected in myeloid malignancy representing a clonal marker (excluding germline mutations) OR A diagnosis of MDS as according to World Health Organization (WHO) 2016 diagnostic criteria • Revised international prognostic scoring system (IPSS-R) risk score ≤ 3 AND bone marrow blast percentage < 5 defining low-risk OR A diagnosis of CMML-0 or -1 as according to WHO 2016 diagnostic criteria AND (All diagnostic categories) The presence of a detectable mutation in genes recurrently affected in myeloid malignancy representing a clonal marker (excluding germline mutations) Exclusion Criteria:
- Unwillingness to discontinue any and all use of vitamin C medication/supplementation including multivitamin at least 24 hours prior to Baseline investigations and sampling
- Lack of ability to understand the information given, or lack of willingness to sign a written informed consent document
- Treatment with chemotherapy within the past 6 months
- Patients receiving active treatment for their myeloid malignancy, including investigational agents, with the exception of granulocyte colony-stimulating factor (G-CSF) and erythropoietin
- History of allergic reactions to ascorbic acid
- Unwillingness to comply with all aspects of the protocol
Sites
Please contact the trial administrator to learn more about where you can participate in this trial. Please use the contact form on the right side.
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